This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PAUN.1

USA/LOC_000PAUN.1/2002-01-01
C. T. Davis, G. D. Ebel, R. S. Lanciotti, A. C. Brault, H. Guzman, M. Siirin, A. Lambert, R. E. Parsons, D. W. Beasley, R. J. Novak, D. Elizondo-Quiroga, E. N. Green, D. S. Young, L. M. Stark, M. A. Drebot, H. Artsob, R. B. Tesh, L. D. Kramer, A. D. Barrett & T. C. Davis

University of Texas Medical Branch, Pathology

Sample details

Collection date
2002
Earliest release date
2005-10-08
Sampling location
USA (IN)
Isolate name
IN 2002

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 21:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2005-10-08
NCBI update date
2005-11-18
INSDC accession

Host

Host

Submission details

Submission ID
DQ164200.1
Submitting group
Date submitted
2026-03-26 21:56:43 UTC
Date released
2026-03-26 21:59:17 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
22
Total ambiguous nucs
1
Length
11029 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • T642C
  • A750G
  • T1442C
  • C1465T
  • C1803T
  • C2466T
  • C4107T
  • A4146G
  • C4803T
  • G5280A
  • C6138T
  • T6405C
  • C6426T
  • C6996T
  • C7873T
  • T7938C
  • T8235C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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