This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PB8U.1

Russia/Ast02-2-26/unknown
G. K. Sadykova, O. V. Lyapina, E. I. Samokhvalov, R. M. Kinney, R. Tsychia & A. G. Prilipov

Ivanovsky Virology Institute RAMS, Molecular Genetic laboratory

Sample details

Earliest release date
2006-02-14
Sampling location
Russia
Isolate name
Ast02-2-26

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 21:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2006-02-14
NCBI update date
2006-02-14
INSDC accession

Host

Host

Submission details

Submission ID
DQ377178.1
Submitting group
Date submitted
2026-03-26 21:56:43 UTC
Date released
2026-03-26 21:59:17 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
297
Length
10811 (98%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:S99P
  • NS1:T298I
  • NS2A:I183V
  • NS2A:R188K
  • NS2A:A224T
  • NS3:T249P
  • NS4A:A58T
  • NS4A:V85T
  • NS5:K177R
  • NS5:I632V
  • NS5:S682A
  • env:F90Y
  • env:K93R
  • env:S156P
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C129T
  • C283A
  • G291A
  • C340T
  • A417G
  • G420A
  • T513C
  • T528C
  • C534T
  • T585C
  • A630G
  • C631T
  • T648C
  • G753T
  • G903A
  • A919C
  • T945C
  • A957G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:S99P
  • NS1:T298I

NS2A

  • NS2A:I183V
  • NS2A:R188K
  • NS2A:A224T

NS2B

  • NS2B:V103A

NS3

  • NS3:T356I

NS4A

  • NS4A:A58T
  • NS4A:A85T

NS5

  • NS5:I632V
  • NS5:S682A

env

  • env:F90Y
  • env:I126T
  • env:S156P
  • env:V159I
  • env:L167F
Deletions
N/A
Insertions
N/A

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