This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PBJ7.1

USA/03-20TX/2003-01-01
B. L. Herring, F. Bernardin, S. Caglioti, S. Stramer, L. Tobler, W. Andrews, L. Cheng, S. Rampersad, C. Cameron, J. Saldanha, M. P. Busch, E. Delwart, B. Herring & M. Busch

Blood Systems Research Institute and University of California, San Francisco

Sample details

Collection date
2003
Earliest release date
2007-03-31
Sampling location
USA (Texas)
Isolate name
03-20TX

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 21:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2007-03-31
NCBI update date
2007-05-08
INSDC accession

Host

Host

Submission details

Submission ID
DQ431693.1
Submitting group
Date submitted
2026-03-26 21:56:43 UTC
Date released
2026-03-26 21:59:17 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
32
Total ambiguous nucs
2
Length
10520 (95.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS3:Y549H
  • NS4A:E34D
  • NS4A:V85A
  • NS5:K177R
  • NS5:K314R
  • capsid:I44T
  • env:D37N
  • env:K93R
  • env:T126I
  • env:I159A
  • env:T484M
  • prM:V156I
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T227C
  • A630G
  • T642C
  • C660T
  • G931A
  • G1075A
  • C1077T
  • C1434T
  • T1442C
  • C1465T
  • C2417T
  • C2466T
  • C2638T
  • C4107T
  • A4146G
  • C4803T
  • G5280A
  • C6138T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:Y549H

NS4A

  • NS4A:E34D

NS5

  • NS5:K314R

capsid

  • capsid:I44T

env

  • env:D37N
  • env:V159A
  • env:L167F
  • env:T484M

prM

  • prM:V156I
Deletions
N/A
Insertions
N/A

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