This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PKUD.1

USA/03-028/2003-01-01
B. L. Herring, F. Bernardin, S. Caglioti, S. Stramer, L. Tobler, W. Andrews, L. Cheng, S. Rampersad, C. Cameron, J. Saldanha, M. P. Busch, E. Delwart & E. L. Delwart

Blood Systems Research Institute and University of California, San Francisco

Sample details

Collection date
2003
Earliest release date
2006-09-24
Sampling location
USA (Minneapolis MN)
Isolate name
03-028

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 21:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2006-09-24
NCBI update date
2016-07-14
INSDC accession

Host

Host

Submission details

Submission ID
DQ911962.1
Submitting group
Date submitted
2026-03-26 21:56:43 UTC
Date released
2026-03-26 21:59:17 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
5
Length
1418 (12.9%)
Amino Acid Mutations from founder clade
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A1320G
  • T1442C
  • C1465T
  • C1974T
  • T2089C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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