This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DBJT.1

India/282A/2014-01-01
S. A. Khan, P. Chowdhury, P. Choudhury & P. Dutta

RMRC, ICMR, Dibrugarh, Entomology and Filariasis

Sample details

Collection date
2014
Earliest release date
2017-02-20
Sampling location
India
Isolate name
282A

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 21:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-02-20
NCBI update date
2017-02-20
INSDC accession

Host

Host

Submission details

Submission ID
KX646171.1
Submitting group
Date submitted
2026-03-26 21:57:25 UTC
Date released
2026-03-26 22:09:48 UTC

Lineage

Lineage
5

Files

Annotations

Alignment and QC

Total SNPs
87
Total deleted nucs
100
Total frame shifts
1
Frame shifts
NS1:349-352(nt:3512-3525)
Length
426 (4.77%)
Amino Acid Mutations from founder clade
  • NS1:C312S
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T3057C
  • T3069C
  • A3082G
  • C3085T
  • T3090C
  • T3093G
  • G3096A
  • G3102A
  • A3108G
  • G3111A
  • A3114C
  • C3118T
  • T3123G
  • A3132G
  • A3135C
  • T3138C
  • T3147G
  • G3150A
Deletions

3444-3511, 3523-3554
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:R205G
  • NS1:L206F
  • NS1:D208E
  • NS1:I236V
  • NS1:L237V
  • NS1:T262M
  • NS1:I275L
  • NS1:L287V
  • NS1:P296A
  • NS1:A297S
  • NS1:E303D
  • NS1:C312S
  • NS1:Y323F
Deletions

NS1

NS1:326-348
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue