This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DYL2.1

USA/LOC_001DYL2.1/2009-09-15
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2009-09-15
Earliest release date
2019-01-20
Sampling location
USA (Pine_Valley,California)
Isolate name
WNV/bird/Pine_Valley_CA_USA/2009-09-15/W050

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 21:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH507649.1
Submitting group
Date submitted
2026-03-26 21:57:25 UTC
Date released
2026-03-26 22:10:55 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
63
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103F
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4A:V89A
  • NS5:K177R
  • NS5:K314R
  • NS5:H450Y
  • capsid:A112V
  • env:K93R
  • env:T126I
  • env:I159A
  • env:V431I
  • env:V488I
  • prM:T20A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T339C
  • C431T
  • A523G
  • A630G
  • C660T
  • C1317T
  • T1442C
  • C1465T
  • T1821C
  • T1998C
  • G2257A
  • G2428A
  • C2466T
  • C3118T
  • C3570T
  • G3768A
  • T3993A
  • C4107T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2B

  • NS2B:V103F

NS4A

  • NS4A:V89A

NS5

  • NS5:K314R
  • NS5:H450Y

capsid

  • capsid:A112V

env

  • env:V159A
  • env:L167F
  • env:V431I
  • env:V488I

prM

  • prM:T20A
Deletions
N/A
Insertions
N/A

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