This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001EYMY.1

Italy/LOC_001EYMY.1/2022-07-12
L. Barzon, M. Pacenti, F. Montarsi, D. Fornasiero, F. Gobbo, E. Quaranta, I. Monne, A. Fusaro, A. Volpe, A. Sinigaglia, S. Riccetti, E. D. Molin, S. Satto, V. Lisi, F. Gobbi, S. Galante, G. Feltrin, V. Valeriano, L. Favero, F. Russo, M. Mazzucato, A. Bortolami, P. Mulatti, C. Terregino, ..., A. Salviato

Istituto Zooprofilattico Sperimentale delle Venezie, Division of Comparative Biomedical Science

Sample details

Collection date
2022-07-12
Earliest release date
2022-11-13
Sampling location
Italy
Isolate name
Italy/2022/Rovigo/22VIR7419

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 21:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-11-13
NCBI update date
2022-11-13
INSDC accession

Host

Host

Submission details

Submission ID
OP609802.1
Submitting group
Date submitted
2026-03-26 21:57:25 UTC
Date released
2026-03-26 22:14:09 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
487
Length
10824 (98.1%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:A70S
  • NS2A:R122H
  • NS3:T249P
  • NS4B:E249D
  • NS5:K177R
  • NS5:K432R
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A65G
  • A156T
  • G168A
  • T195A
  • C210T
  • G219A
  • T234C
  • C282T
  • G354A
  • G447T
  • T477C
  • C483T
  • G492A
  • G495T
  • T510C
  • C561T
  • C600T
  • T606C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:A70S

NS2A

  • NS2A:R122H

NS2B

  • NS2B:V103A

NS3

  • NS3:T356I

NS4A

  • NS4A:A85V

NS4B

  • NS4B:E249D

NS5

  • NS5:K432R

env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue