This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001HBA1.1

Italy/221351_2_Italy_Lombardy_2018-01-01/2018-01-01
C. della Ventura, M. Carrera, F. Defilippo, D. Lelli, C. Nogarol, M. L. Mandola, A. Lai, A. Bergna, F. Moroni, A. Moreno & G. Zehender

University of Milan, Department of Biomedical and Clinical Sciences

Sample details

Collection date
2018-01-01
Earliest release date
2026-02-24
Sampling location
Italy (Lombardy)
Isolate name
221351_2_Italy_Lombardy_2018-01-01

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 21:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2026-02-24
NCBI update date
2026-02-24
INSDC accession

Submission details

Submission ID
PX632850.1
Submitting group
Date submitted
2026-03-26 21:57:25 UTC
Date released
2026-03-26 22:20:38 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
332
Total ambiguous nucs
1
Length
1588 (14.4%)
Amino Acid Mutations from founder clade
  • env:K71R
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T900A
  • G903A
  • C912A
  • G918A
  • A919C
  • A921C
  • T924C
  • T932C
  • G934A
  • G936C
  • T945C
  • T946C
  • C954A
  • T960A
  • C972T
  • C976T
  • T978G
  • C987T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:E55D
  • env:T64S
  • env:K71R
  • env:D83E
  • env:R93K
  • env:S122T
  • env:I126T
  • env:R128W
  • env:T129I
  • env:L131Q
  • env:V159T
  • env:L167F
  • env:A172S
  • env:N199S
  • env:T205S
  • env:T208A
  • env:T210S
  • env:V232T

prM

  • prM:V156A
  • prM:V157I
Deletions
N/A
Insertions
N/A

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